Microgemma includes 5 children:
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Microgemma carolinus G. Casal, E. Matos, P. Garcia, S. Al-Quraishy & C. Azevedo 2012
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Microgemma hepaticus J. R. Ralphs & R. A. Matthews 1986
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Microgemma ovoidea (Thélohan) Amigó, Salvado, P. Gracia & Vivares 1996
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Microgemma tincae Mansour, Prensier, Ben Jemaa, Ben Hassine, Metenier, Vivares & Cornillot 2005
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Microgemma vivaresi E. U. Canning, Feist, Longshaw, Okamura, Anderson, Tse & Curry 2005
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