Import Log for Polytraits

• Started: August 10, 2023 08:36
• Completed: 08:48:50
• Failed: No.
• Status: completed

Events (most recent first):

• 08:48:09 (warns) There were NO new pages, skipping...
• 08:48:07 (warns) MISSING https://content.eol.org/data/polytraits/publish_content_sections.tsv [404] (8 bytes); skipping
• 08:48:07 (warns) MISSING https://content.eol.org/data/polytraits/publish_references.tsv [404] (8 bytes); skipping
• 08:48:07 (warns) MISSING https://content.eol.org/data/polytraits/publish_image_info.tsv [404] (8 bytes); skipping
• 08:48:07 (warns) MISSING https://content.eol.org/data/polytraits/publish_attributions.tsv [404] (8 bytes); skipping
• 08:48:06 (warns) MISSING https://content.eol.org/data/polytraits/publish_media.tsv [404] (8 bytes); skipping
• 08:48:06 (warns) MISSING https://content.eol.org/data/polytraits/publish_articles.tsv [404] (8 bytes); skipping
• 08:48:06 (warns) MISSING https://content.eol.org/data/polytraits/publish_vernaculars.tsv [404] (8 bytes); skipping
• 08:48:05 (warns) MISSING https://content.eol.org/data/polytraits/publish_bibliographic_citations.tsv [404] (8 bytes); skipping
• 08:48:04 (warns) MISSING https://content.eol.org/data/polytraits/publish_referents.tsv [404] (8 bytes); skipping
• 08:48:04 (warns) All existing content has been destroyed for the resource.
• 08:42:57 (warns) Trait Publishing failed: At https://eol.org/data/polytraits/publish_metadata.tsv @ position 18563 - there's a field starting with a quote and whereas it ends that quote there seems to be characters in that field after that ending quote. That isn't supported. This is what I read: 'Cardell, M., Gili, J. (1988) Distribution of a populatiion of annelid polychaetes in the "trottoir\" " ' FROM /usr/local/bundle/bundler/gems/neo4j-ruby-driver-fe5438fb945d/ffi/neo4j/driver/internal/handlers/response_handler.rb:38:in `check_summary_failure' << /app/lib/trait_bank/slurp.rb:559:in `merge_triple' << /app/lib/trait_bank/slurp.rb:444:in `block in load_csv_where' << /app/lib/trait_bank/slurp.rb:444:in `each' << /app/lib/trait_bank/slurp.rb:444:in `load_csv_where' << /app/lib/trait_bank/slurp.rb:331:in `block (2 levels) in load_csv'
• 08:42:57 (warns) Exception (Neo4j::Driver::Exceptions::DatabaseException) FROM: #merge_triple QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/polytraits/publish_metadata.tsv' AS row WITH row WHERE 1=1 MATCH (metadata:MetaData { eol_pk: row.eol_pk }) MATCH (trait:Trait { eol_pk: row.trait_eol_pk })}
• 08:42:57 (warns) Exception (Neo4j::Driver::Exceptions::DatabaseException) QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/polytraits/publish_metadata.tsv' AS row WITH row WHERE 1=1 MATCH (metadata:MetaData { eol_pk: row.eol_pk }) MATCH (trait:Trait { eol_pk: row.trait_eol_pk }) MERGE (trait)-[:metadata]->(metadata)} MESSAGE: At https://eol.org/data/polytraits/publish_metadata.tsv @ position 18563 - there's a field starting with a quote and whereas it ends that quote there seems to be characters in that field after that ending quote. That isn't supported. This is what I read: 'Cardell, M., Gili, J. (1988) Distribution of a populatiion of annelid polychaetes in the "trottoir\" " '
• 08:42:57 (warns) Exception (Neo4j::Driver::Exceptions::DatabaseException) QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/polytraits/publish_metadata.tsv' AS row WITH row WHERE 1=1 MERGE (metadata:MetaData { eol_pk: row.eol_pk }) ON CREATE SET metadata.source = row.source ON MATCH SET metadata.source = row.source ON CREATE SET metadata.literal = row.literal ON MATCH SET metadata.literal = row.literal ON CREATE SET metadata.measurement = row.measurement ON MATCH SET metadata.measurement = row.measurement} MESSAGE: At https://eol.org/data/polytraits/publish_metadata.tsv @ position 18563 - there's a field starting with a quote and whereas it ends that quote there seems to be characters in that field after that ending quote. That isn't supported. This is what I read: 'Cardell, M., Gili, J. (1988) Distribution of a populatiion of annelid polychaetes in the "trottoir\" " '
• 08:42:57 (warns) FAILED on build_nodes query (MetaData), will re-try once...
• 08:42:57 (warns) At https://eol.org/data/polytraits/publish_metadata.tsv @ position 18563 - there's a field starting with a quote and whereas it ends that quote there seems to be characters in that field after that ending quote. That isn't supported. This is what I read: 'Cardell, M., Gili, J. (1988) Distribution of a populatiion of annelid polychaetes in the "trottoir\" " '
• 08:42:57 (warns) Exception (Neo4j::Driver::Exceptions::DatabaseException) QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/polytraits/publish_metadata.tsv' AS row WITH row WHERE 1=1 MERGE (metadata:MetaData { eol_pk: row.eol_pk }) ON CREATE SET metadata.source = row.source ON MATCH SET metadata.source = row.source ON CREATE SET metadata.literal = row.literal ON MATCH SET metadata.literal = row.literal ON CREATE SET metadata.measurement = row.measurement ON MATCH SET metadata.measurement = row.measurement} MESSAGE: At https://eol.org/data/polytraits/publish_metadata.tsv @ position 18563 - there's a field starting with a quote and whereas it ends that quote there seems to be characters in that field after that ending quote. That isn't supported. This is what I read: 'Cardell, M., Gili, J. (1988) Distribution of a populatiion of annelid polychaetes in the "trottoir\" " '
• 08:42:29 (warns) There were NO new pages, skipping...
• 08:42:27 (warns) MISSING https://content.eol.org/data/polytraits/publish_content_sections.tsv [404] (8 bytes); skipping
• 08:42:27 (warns) MISSING https://content.eol.org/data/polytraits/publish_references.tsv [404] (8 bytes); skipping
• 08:42:27 (warns) MISSING https://content.eol.org/data/polytraits/publish_image_info.tsv [404] (8 bytes); skipping
• 08:42:27 (warns) MISSING https://content.eol.org/data/polytraits/publish_attributions.tsv [404] (8 bytes); skipping
• 08:42:27 (warns) MISSING https://content.eol.org/data/polytraits/publish_media.tsv [404] (8 bytes); skipping
• 08:42:26 (warns) MISSING https://content.eol.org/data/polytraits/publish_articles.tsv [404] (8 bytes); skipping
• 08:42:26 (warns) MISSING https://content.eol.org/data/polytraits/publish_vernaculars.tsv [404] (8 bytes); skipping
• 08:42:24 (warns) MISSING https://content.eol.org/data/polytraits/publish_bibliographic_citations.tsv [404] (8 bytes); skipping
• 08:42:23 (warns) MISSING https://content.eol.org/data/polytraits/publish_referents.tsv [404] (8 bytes); skipping
• 08:42:23 (warns) All existing content has been destroyed for the resource.
• 08:38:11 (warns) Trait Publishing failed: At https://eol.org/data/polytraits/publish_metadata.tsv @ position 18553 - there's a field starting with a quote and whereas it ends that quote there seems to be characters in that field after that ending quote. That isn't supported. This is what I read: 'Cardell, M., Gili, J. (1988) Distribution of a populatiion of annelid polychaetes in the \"tt' FROM /usr/local/bundle/bundler/gems/neo4j-ruby-driver-fe5438fb945d/ffi/neo4j/driver/internal/handlers/response_handler.rb:38:in `check_summary_failure' << /app/lib/trait_bank/slurp.rb:559:in `merge_triple' << /app/lib/trait_bank/slurp.rb:444:in `block in load_csv_where' << /app/lib/trait_bank/slurp.rb:444:in `each' << /app/lib/trait_bank/slurp.rb:444:in `load_csv_where' << /app/lib/trait_bank/slurp.rb:331:in `block (2 levels) in load_csv'
• 08:38:11 (warns) Exception (Neo4j::Driver::Exceptions::DatabaseException) FROM: #merge_triple QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/polytraits/publish_metadata.tsv' AS row WITH row WHERE 1=1 MATCH (metadata:MetaData { eol_pk: row.eol_pk }) MATCH (trait:Trait { eol_pk: row.trait_eol_pk })}
• 08:38:11 (warns) Exception (Neo4j::Driver::Exceptions::DatabaseException) QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/polytraits/publish_metadata.tsv' AS row WITH row WHERE 1=1 MATCH (metadata:MetaData { eol_pk: row.eol_pk }) MATCH (trait:Trait { eol_pk: row.trait_eol_pk }) MERGE (trait)-[:metadata]->(metadata)} MESSAGE: At https://eol.org/data/polytraits/publish_metadata.tsv @ position 18553 - there's a field starting with a quote and whereas it ends that quote there seems to be characters in that field after that ending quote. That isn't supported. This is what I read: 'Cardell, M., Gili, J. (1988) Distribution of a populatiion of annelid polychaetes in the \"tt'
• 08:38:11 (warns) Exception (Neo4j::Driver::Exceptions::DatabaseException) QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/polytraits/publish_metadata.tsv' AS row WITH row WHERE 1=1 MERGE (metadata:MetaData { eol_pk: row.eol_pk }) ON CREATE SET metadata.source = row.source ON MATCH SET metadata.source = row.source ON CREATE SET metadata.literal = row.literal ON MATCH SET metadata.literal = row.literal ON CREATE SET metadata.measurement = row.measurement ON MATCH SET metadata.measurement = row.measurement} MESSAGE: At https://eol.org/data/polytraits/publish_metadata.tsv @ position 18553 - there's a field starting with a quote and whereas it ends that quote there seems to be characters in that field after that ending quote. That isn't supported. This is what I read: 'Cardell, M., Gili, J. (1988) Distribution of a populatiion of annelid polychaetes in the \"tt'
• 08:38:11 (warns) FAILED on build_nodes query (MetaData), will re-try once...
• 08:38:11 (warns) At https://eol.org/data/polytraits/publish_metadata.tsv @ position 18553 - there's a field starting with a quote and whereas it ends that quote there seems to be characters in that field after that ending quote. That isn't supported. This is what I read: 'Cardell, M., Gili, J. (1988) Distribution of a populatiion of annelid polychaetes in the \"tt'
• 08:38:11 (warns) Exception (Neo4j::Driver::Exceptions::DatabaseException) QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/polytraits/publish_metadata.tsv' AS row WITH row WHERE 1=1 MERGE (metadata:MetaData { eol_pk: row.eol_pk }) ON CREATE SET metadata.source = row.source ON MATCH SET metadata.source = row.source ON CREATE SET metadata.literal = row.literal ON MATCH SET metadata.literal = row.literal ON CREATE SET metadata.measurement = row.measurement ON MATCH SET metadata.measurement = row.measurement} MESSAGE: At https://eol.org/data/polytraits/publish_metadata.tsv @ position 18553 - there's a field starting with a quote and whereas it ends that quote there seems to be characters in that field after that ending quote. That isn't supported. This is what I read: 'Cardell, M., Gili, J. (1988) Distribution of a populatiion of annelid polychaetes in the \"tt'
• 08:37:53 (warns) There were NO new pages, skipping...
• 08:36:44 (warns) MISSING https://content.eol.org/data/polytraits/publish_content_sections.tsv [404] (8 bytes); skipping
• 08:36:40 (warns) MISSING https://content.eol.org/data/polytraits/publish_references.tsv [404] (8 bytes); skipping
• 08:36:36 (warns) MISSING https://content.eol.org/data/polytraits/publish_image_info.tsv [404] (8 bytes); skipping
• 08:36:36 (warns) MISSING https://content.eol.org/data/polytraits/publish_attributions.tsv [404] (8 bytes); skipping
• 08:36:36 (warns) MISSING https://content.eol.org/data/polytraits/publish_media.tsv [404] (8 bytes); skipping
• 08:36:36 (warns) MISSING https://content.eol.org/data/polytraits/publish_articles.tsv [404] (8 bytes); skipping
• 08:36:36 (warns) MISSING https://content.eol.org/data/polytraits/publish_vernaculars.tsv [404] (8 bytes); skipping
• 08:36:35 (warns) MISSING https://content.eol.org/data/polytraits/publish_bibliographic_citations.tsv [404] (8 bytes); skipping
• 08:36:34 (warns) MISSING https://content.eol.org/data/polytraits/publish_referents.tsv [404] (8 bytes); skipping
• 08:36:34 (warns) All existing content has been destroyed for the resource.