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Started:
June 02, 2022 12:17
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Completed:
12:46:33.000
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Failed:
No.
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Status:
completed
Events (most recent first):
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12:46:26.000
(warns)
Trait Publishing failed: The transaction has been terminated. Retry your operation in a new transaction, and you should see a successful result. The transaction has not completed within the specified timeout (dbms.transaction.timeout). You may want to retry with a longer timeout. FROM /usr/local/bundle/bundler/gems/neo4j-ruby-driver-fe5438fb945d/ffi/neo4j/driver/internal/handlers/response_handler.rb:38:in `check_summary_failure' << /app/lib/trait_bank/slurp.rb:562:in `merge_triple' << /app/lib/trait_bank/slurp.rb:447:in `block in load_csv_where' << /app/lib/trait_bank/slurp.rb:447:in `each' << /app/lib/trait_bank/slurp.rb:447:in `load_csv_where' << /app/lib/trait_bank/slurp.rb:331:in `block (2 levels) in load_csv'
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12:46:26.000
(warns)
Exception (Neo4j::Driver::Exceptions::ClientException) FROM: #merge_triple QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/Globi/publish_traits_chunk_2.csv' AS row WITH row WHERE (row.object_page_id IS NOT NULL AND TRIM(row.object_page_id) <> '')
MATCH (trait:Trait { eol_pk: row.eol_pk })
MATCH (object_page:Page { page_id: toInteger(row.object_page_id) })}
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12:46:26.000
(warns)
Exception (Neo4j::Driver::Exceptions::ClientException) QUERY: {USING PERIODIC COMMIT LOAD CSV WITH HEADERS FROM 'https://eol.org/data/Globi/publish_traits_chunk_2.csv' AS row WITH row WHERE (row.object_page_id IS NOT NULL AND TRIM(row.object_page_id) <> '')
MATCH (trait:Trait { eol_pk: row.eol_pk })
MATCH (object_page:Page { page_id: toInteger(row.object_page_id) })
MERGE (trait)-[:object_page]->(object_page)} MESSAGE: The transaction has been terminated. Retry your operation in a new transaction, and you should see a successful result. The transaction has not completed within the specified timeout (dbms.transaction.timeout). You may want to retry with a longer timeout.
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12:37:44.000
(warns)
Found 5552474 rows, will break up into 128000
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12:28:44.000
(warns)
There were NO new pages, skipping...
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12:27:54.000
(warns)
MISSING https://content.eol.org/data/Globi/publish_content_sections.tsv [404] (8 bytes); skipping
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12:27:54.000
(warns)
MISSING https://content.eol.org/data/Globi/publish_references.tsv [404] (8 bytes); skipping
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12:27:54.000
(warns)
MISSING https://content.eol.org/data/Globi/publish_image_info.tsv [404] (8 bytes); skipping
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12:27:54.000
(warns)
MISSING https://content.eol.org/data/Globi/publish_attributions.tsv [404] (8 bytes); skipping
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12:27:54.000
(warns)
MISSING https://content.eol.org/data/Globi/publish_media.tsv [404] (8 bytes); skipping
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12:27:54.000
(warns)
MISSING https://content.eol.org/data/Globi/publish_articles.tsv [404] (8 bytes); skipping
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12:27:54.000
(warns)
MISSING https://content.eol.org/data/Globi/publish_vernaculars.tsv [404] (8 bytes); skipping
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12:24:57.000
(warns)
MISSING https://content.eol.org/data/Globi/publish_identifiers.tsv [404] (8 bytes); skipping
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12:24:57.000
(warns)
MISSING https://content.eol.org/data/Globi/publish_bibliographic_citations.tsv [404] (8 bytes); skipping
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12:24:34.000
(warns)
MISSING https://content.eol.org/data/Globi/publish_referents.tsv [404] (8 bytes); skipping
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12:24:34.000
(warns)
All existing content has been destroyed for the resource.
