Import Log for Global Biotic Interactions

  • Started: March 24, 2021 13:30
  • Completed: 13:36:47.000
  • Failed: No.
  • Status: completed

Events (most recent first):

  • 13:36:48.000 (ends) Complete
  • 13:36:47.000 (ends) TOTAL TIME: 6.7m
  • 13:36:42.000 (starts) Resource#fix_native_nodes
  • 13:36:42.000 (warns) Trait Publishing failed: The transaction has been terminated. Retry your operation in a new transaction, and you should see a successful result. The transaction has not completed within the specified timeout (dbms.transaction.timeout). You may want to retry with a longer timeout. FROM /usr/local/bundle/bundler/gems/neo4j-ruby-driver-fe5438fb945d/ffi/neo4j/driver/internal/handlers/response_handler.rb:38:in `check_summary_failure' << /app/lib/trait_bank/slurp.rb:409:in `build_nodes' << /app/lib/trait_bank/slurp.rb:232:in `block (2 levels) in load_csv' << /app/lib/trait_bank/slurp.rb:231:in `each' << /app/lib/trait_bank/slurp.rb:231:in `block in load_csv' << /app/lib/trait_bank/slurp.rb:247:in `block in break_up_large_files'
  • 13:34:44.000 (starts) #publish_traits = TraitBank::Slurp.load_resource_from_repo
  • 13:34:44.000 (starts) Remove traits
  • 13:34:44.000 (starts) Fixing native nodes...
  • 13:34:44.000 (warns) Skipping reindexing. You should reindex soon.
  • 13:34:44.000 (infos) importing 201 Pages
  • 13:34:43.000 (infos) importing 1000 Pages
  • 13:34:43.000 (infos) importing 1000 Pages
  • 13:34:43.000 (infos) importing 1000 Pages
  • 13:34:43.000 (infos) importing 1000 Pages
  • 13:34:42.000 (infos) importing 1000 Pages
  • 13:34:42.000 (infos) importing 1000 Pages
  • 13:34:42.000 (infos) importing 1000 Pages
  • 13:34:42.000 (infos) importing 1000 Pages
  • 13:34:41.000 (infos) importing 1000 Pages
  • 13:34:41.000 (infos) importing 1000 Pages
  • 13:34:41.000 (infos) importing 1000 Pages
  • 13:34:41.000 (infos) importing 1000 Pages
  • 13:34:41.000 (infos) importing 1000 Pages
  • 13:34:40.000 (infos) importing 1000 Pages
  • 13:34:40.000 (infos) importing 1000 Pages
  • 13:34:40.000 (infos) importing 1000 Pages
  • 13:34:40.000 (infos) importing 1000 Pages
  • 13:34:39.000 (infos) importing 1000 Pages
  • 13:34:39.000 (infos) importing 1000 Pages
  • 13:34:39.000 (infos) importing 1000 Pages
  • 13:34:39.000 (infos) importing 1000 Pages
  • 13:34:38.000 (infos) importing 1000 Pages
  • 13:34:38.000 (infos) importing 1000 Pages
  • 13:34:38.000 (infos) importing 1000 Pages
  • 13:34:38.000 (infos) importing 1000 Pages
  • 13:34:37.000 (infos) importing 1000 Pages
  • 13:34:37.000 (infos) importing 1000 Pages
  • 13:34:37.000 (infos) importing 1000 Pages
  • 13:34:37.000 (infos) importing 1000 Pages
  • 13:34:36.000 (infos) importing 1000 Pages
  • 13:34:36.000 (infos) importing 1000 Pages
  • 13:34:36.000 (infos) importing 1000 Pages
  • 13:33:26.000 (starts) create_new_pages
  • 13:33:24.000 (starts) PageCreator
  • 13:33:24.000 (starts) restoring vernacular preferences...
  • 13:33:20.000 (starts) #propagate_ids ContentSection
  • 13:33:16.000 (starts) #import ContentSection
  • 13:33:16.000 (warns) MISSING http://content.eol.org/data/Globi/publish_content_sections.tsv [404] (10 bytes); skipping
  • 13:33:16.000 (starts) ContentSection
  • 13:33:16.000 (starts) #propagate_ids Reference
  • 13:33:16.000 (starts) #import Reference