Import Log for Global Biotic Interactions

• Started: March 24, 2021 09:30
• Completed: 09:36:47.000
• Failed: No.
• Status: completed

Events (most recent first):

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• 09:36:48.000 (ends) Complete
• 09:36:47.000 (ends) TOTAL TIME: 6.7m
• 09:36:42.000 (starts) Resource#fix_native_nodes
• 09:36:42.000 (warns) Trait Publishing failed: The transaction has been terminated. Retry your operation in a new transaction, and you should see a successful result. The transaction has not completed within the specified timeout (dbms.transaction.timeout). You may want to retry with a longer timeout. FROM /usr/local/bundle/bundler/gems/neo4j-ruby-driver-fe5438fb945d/ffi/neo4j/driver/internal/handlers/response_handler.rb:38:in `check_summary_failure' << /app/lib/trait_bank/slurp.rb:409:in `build_nodes' << /app/lib/trait_bank/slurp.rb:232:in `block (2 levels) in load_csv' << /app/lib/trait_bank/slurp.rb:231:in `each' << /app/lib/trait_bank/slurp.rb:231:in `block in load_csv' << /app/lib/trait_bank/slurp.rb:247:in `block in break_up_large_files'
• 09:34:44.000 (starts) #publish_traits = TraitBank::Slurp.load_resource_from_repo
• 09:34:44.000 (starts) Remove traits
• 09:34:44.000 (starts) Fixing native nodes...
• 09:34:44.000 (warns) Skipping reindexing. You should reindex soon.
• 09:34:44.000 (infos) importing 201 Pages
• 09:34:43.000 (infos) importing 1000 Pages
• 09:34:43.000 (infos) importing 1000 Pages
• 09:34:43.000 (infos) importing 1000 Pages
• 09:34:43.000 (infos) importing 1000 Pages
• 09:34:42.000 (infos) importing 1000 Pages
• 09:34:42.000 (infos) importing 1000 Pages
• 09:34:42.000 (infos) importing 1000 Pages
• 09:34:42.000 (infos) importing 1000 Pages
• 09:34:41.000 (infos) importing 1000 Pages
• 09:34:41.000 (infos) importing 1000 Pages
• 09:34:41.000 (infos) importing 1000 Pages
• 09:34:41.000 (infos) importing 1000 Pages
• 09:34:41.000 (infos) importing 1000 Pages
• 09:34:40.000 (infos) importing 1000 Pages
• 09:34:40.000 (infos) importing 1000 Pages
• 09:34:40.000 (infos) importing 1000 Pages
• 09:34:40.000 (infos) importing 1000 Pages
• 09:34:39.000 (infos) importing 1000 Pages
• 09:34:39.000 (infos) importing 1000 Pages
• 09:34:39.000 (infos) importing 1000 Pages
• 09:34:39.000 (infos) importing 1000 Pages
• 09:34:38.000 (infos) importing 1000 Pages
• 09:34:38.000 (infos) importing 1000 Pages
• 09:34:38.000 (infos) importing 1000 Pages
• 09:34:38.000 (infos) importing 1000 Pages
• 09:34:37.000 (infos) importing 1000 Pages
• 09:34:37.000 (infos) importing 1000 Pages
• 09:34:37.000 (infos) importing 1000 Pages
• 09:34:37.000 (infos) importing 1000 Pages
• 09:34:36.000 (infos) importing 1000 Pages
• 09:34:36.000 (infos) importing 1000 Pages
• 09:34:36.000 (infos) importing 1000 Pages
• 09:33:26.000 (starts) create_new_pages
• 09:33:24.000 (starts) PageCreator
• 09:33:24.000 (starts) restoring vernacular preferences...
• 09:33:20.000 (starts) #propagate_ids ContentSection
• 09:33:16.000 (starts) #import ContentSection
• 09:33:16.000 (warns) MISSING http://content.eol.org/data/Globi/publish_content_sections.tsv [404] (10 bytes); skipping
• 09:33:16.000 (starts) ContentSection
• 09:33:16.000 (starts) #propagate_ids Reference
• 09:33:16.000 (starts) #import Reference

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