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Sinorhizobium ( Catalão; Valenciano )

fornecido por wikipedia CA

Sinorhizobium/Ensifer és un gènere de bacteris que fan la fixació del nitrogen (rhizobia), tres dels quals (Sinorhizobium meliloti,[17][18] Sinorhizobium medicae[19] i Sinorhizobium fredii[20]) han estat seqüenciats.

Etimologia

Sinorhizobium és una ombinació del llatí medieval sino, -a (que significa "Xina"), el grec rhizo, -a (que significa "arrel"), i el neollatí bios (que significa "vida"). Per tal en conjunt significa "un bacteri que viu a les arrels a la Xina".[10][21]

Ensifer prové del terme del neollatí ensifer, que significa "que porta espasa".[6]

Nom acceptat

El mom Ensifer es va publicar l’any 1982 i el nom Sinorhizobium es va publicar el 1988. Per les regles del Codi Bacteriològic (Revisió de 1990) del International Committee on Systematics of Prokaryotes (ICSP), el nom més antic (Ensifer) té prioritat.[22] Tanmateix tots dos noms continuen sent usats en la bibliografia científica, sent el de Sinorhizobium el més comú.


Filogènia

La taxonomia actual està basada en la List of Prokaryotic names with Standing in Nomenclature (LPSN)[1][2] and National Center for Biotechnology Information (NCBI)[23] i la filogènia es basa en el The All-Species Living Tree Project[24]








Ensifer mexicanus Lloret et al. 2011



Sinorhizobium terangae De Lajudie et al. 1994




Sinorhizobium saheli De Lajudie et al. 1994




Sinorhizobium kostiensis Nick et al. 1999




Sinorhizobium kummerowiae Wei et al. 2002




Sinorhizobium fredii (Scholla and Elkan 1984) Chen et al. 1988[25]



Sinorhizobium americanum corrig. Toledo et al. 2004





Sinorhizobium arboris Nick et al. 1999



Ensifer garamanticus Merabet et al. 2010




Sinorhizobium meliloti (Dangeard 1926) De Lajudie et al. 1994



Ensifer numidicus Merabet et al. 2010





Ensifer adhaerens Casida 1982[25]



Referències

  1. 1,0 1,1 J.P. Euzéby. «Sinorhizobium». List of Prokaryotic names with Standing in Nomenclature (LPSN) [1]. [Consulta: 2 maig 2012].
  2. 2,0 2,1 J.P. Euzéby. «Ensifer». List of Prokaryotic names with Standing in Nomenclature (LPSN) [2]. [Consulta: 2 maig 2012].
  3. Garrity, George M.; Brenner, Don J.; Krieg, Noel R.; Staley, James T. (eds.). Bergey's Manual of Systematic Bacteriology, Volume Two: The Proteobacteria, Part C: The Alpha-, Beta-, Delta-, and Epsilonproteobacteria. New York, New York: Springer, 2005, p. 354–361. ISBN 978-0-387-24145-6.
  4. 4,0 4,1 Ogasawara, M., Suzuki, T., Mutoh, I., Annapurna, K., Arora, N. K., Nishimura, Y., and Maheshwari, D. K. «Sinorhizobium indiaense sp. nov. and Sinorhizobium abri sp. nov. isolated from tropical legumes, Sesbania rostrata and Abrus precatorius, respectively». Symbiosis, 34, 1, 2003, pàg. 53–68.
  5. 5,0 5,1 Because no type strains have been submitted to international culture collections, these are not currently recognized as valid species.
  6. 6,0 6,1 L. E. Casida, Jr. «Ensifer adhaerens gen. nov., sp. nov.: A Bacterial Predator of Bacteria in Soil». Int J Syst Bacteriol, 32, 3, 1982, pàg. 339–345. DOI: 10.1099/00207713-32-3-339.
  7. Toledo, I., Lloret, L., and Martínez-Romero, E. «Sinorhizobium americanus sp. nov., a new Sinorhizobium species nodulating native Acacia spp. in Mexico». Syst Appl Microbiol, 26, 1, 2003, pàg. 54–64. DOI: 10.1078/072320203322337317. PMID: 12747410.
  8. 8,0 8,1 Nick, G., de Lajudie, P., Eardly, B. D., Suomalainen, S., Paulin, L., Zhang, X., Gillis, M., and Lindström, K «Sinorhizobium arboris sp. nov. and Sinorhizobium kostiense sp. nov., isolated from leguminous trees in Sudan and Kenya». Int J Syst Bacteriol, 49, Pt. 4, 1999, pàg. 1359–1368. DOI: 10.1099/00207713-49-4-1359. PMID: 10555313.
  9. Reiner Rincón-Rosales, Lourdes Lloret, Edith Ponce, and Esperanza Martínez-Romero «Rhizobia with different symbiotic efficiencies nodulate Acaciella angustissima in Mexico, including Sinorhizobium chiapanecum sp. nov. which has common symbiotic genes with Sinorhizobium mexicanum». Syst Appl Microbiol, 67, 1, 2009, pàg. 103–117. DOI: 10.1111/j.1574-6941.2008.00590.x. PMC: 2784085. PMID: 19120461.
  10. 10,0 10,1 Chen, W. X., Yan, G. H., and Li, J. L. «Numerical taxonomic study of fast-growing soybean rhizobia and a proposal that Rhizobium fredii be assigned to Sinorhizobium gen. nov». Int J Syst Bacteriol, 38, 4, 1988, pàg. 392–397. DOI: 10.1099/00207713-38-4-392.
  11. 11,0 11,1 C. Merabet, M. Martens, M. Mahdhi, F. Zakhia, A. Sy, C. Le Roux, O. Domergue, R. Coopman, A. Bekki, M. Mars, A. Willems and P. de Lajudie «Multi Locus Sequence Analysis of root nodule isolates from Lotus arabicus (Senegal), Lotus creticus, Argyrolobium uniflorum and Medicago sativa (Tunisia) and description of Ensifer numidicus sp. nov. and Ensifer garamanticus sp. nov». Int J Syst Evol Microbiol, (Epub ahead of print), Pt 3, 2009, pàg. 1–33. DOI: 10.1099/ijs.0.012088-0. PMID: 19656922.
  12. Wei, G. H., Wang, E. T., Tan, Z. Y., Zhu, M. E, and Chen, W. X. «Rhizobium indigoferae sp. nov. and Sinorhizobium kummerowiae sp. nov., respectively isolated from Indigofera spp. and Kummerowia stipulacea». Int J Syst Evol Microbiol, 52, Pt. 6, 2002, pàg. 2231–2239. DOI: 10.1099/ijs.0.02030-0. PMID: 12508892.
  13. Rome, S., Fernandez, M. P., Brunel, B., Normand, P., Cleyet-Marel, J. C. «Sinorhizobium medicae sp. nov., isolated from annual Medicago spp». Int J Syst Bacteriol, 46, 4, 1996, pàg. 972–980. DOI: 10.1099/00207713-46-4-972. PMID: 8863426.
  14. 14,0 14,1 14,2 Philippe de Lajudie, Anne Willems, Bruno Pot, Dirk Dewettinck, Gloria Maestrojuan, Marc Neyra, Matthew David Collins, Bernard Dreyfus, Karel Kersters, and Monique Gillis «Polyphasic Taxonomy of Rhizobia: Emendation of the Genus Sinorhizobium and Description of Sinorhizobium meliloti comb. nov., Sinorhizobium saheli sp. nov., and Sinorhizobium teranga sp. nov». Int J Syst Bacteriol, 44, 4, 1994, pàg. 715–733. DOI: 10.1099/00207713-44-4-715.
  15. Lloret, L., Ormeño-Orrillo, E., Rincón, R., Martínez-Romero, J., Rogel-Hernández, M. A., and Martínez-Romero, E. «Ensifer mexicanus sp. nov. a new species nodulating Acacia angustissima (Mill.) Kuntze in Mexico». FEMS Microbiology Ecology, 30, 4, 2007, pàg. 280–290. DOI: 10.1016/j.syapm.2006.12.002. PMID: 17293074.
  16. Li, Q. Q, Tao Wang, E. T., Chang, Y. L., Zhang, Y. Z., Zhang, Y. M., Sui, X. H., Chen, W. F., and Chen, W. X. «Ensifer (Sinorhizobium) sojae sp. nov., isolated from root nodules of Glycine max grown in saline-alkaline soils in Hebei province of China». Int J Syst Evol Microbiol, 49, 8, 2010, pàg. 1359–1368. DOI: 10.1099/ijs.0.025049-0. PMID: 20851917.
  17. Galibert, F. et al. «The composite genome of the legume symbiont Sinorhizobium meliloti». Science, 293, 5530, 2001, pàg. 668–672. DOI: 10.1126/science.1060966. PMID: 11474104.
  18. NCBI Genome Page for Sinorhizobium meliloti
  19. NCBI Genome Page for Sinorhizobium medicae
  20. Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems.
  21. List of Prokaryotic names with Standing in Nomenclature—Genus Sinorhizobium
  22. Young, J. M. «The genus name Ensifer Casida 1982 takes priority over Sinorhizobium Chen et al. 1988, and Sinorhizobium morelense Wang et al. 2002 is a later synonym of Ensifer adhaerens Casida 1982. Is the combination Sinorhizobium adhaerens (Casida 1982) Willems et al. 2003 legitimate? Request for an Opinion». Int J Syst Bacteriol, 53, 6, 2003, pàg. 2107–2110. DOI: 10.1099/ijs.0.02665-0.
  23. Sayers et al. «Sinorhizobium/Ensifer group». National Center for Biotechnology Information (NCBI) taxonomy database [3]. [Consulta: 2 maig 2012].
  24. All-Species Living Tree Project.«16S rRNA-based LTP release 106 (full tree)». Silva Comprehensive Ribosomal RNA Database [4]. [Consulta: 2 maig 2012].
  25. 25,0 25,1 Aquestes són les espècies tipus del gènere depenent del nom del gènere preferit.
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Sinorhizobium: Brief Summary ( Catalão; Valenciano )

fornecido por wikipedia CA

Sinorhizobium/Ensifer és un gènere de bacteris que fan la fixació del nitrogen (rhizobia), tres dels quals (Sinorhizobium meliloti, Sinorhizobium medicae i Sinorhizobium fredii) han estat seqüenciats.

licença
cc-by-sa-3.0
direitos autorais
Autors i editors de Wikipedia
original
visite a fonte
site do parceiro
wikipedia CA

Ensifer (bacterium) ( Inglês )

fornecido por wikipedia EN

Ensifer (often referred to in literature by its synonym Sinorhizobium) is a genus of nitrogen-fixing bacteria (rhizobia), three of which (Ensifer meliloti,[22][23] Ensifer medicae[24] and Ensifer fredii[25][26]) have been sequenced.

Etymology

The generic epithet Ensifer derives from the Latin noun ensifer, "sword-bearer".[3] The synonym Sinorhizobium is a combination of Medieval Latin noun sino ("China"), the Classical Greek noun rhiza ("root"), and the Classical Greek noun bium ("life"). Thus, the Neo-Latin generic epithet of the synonym Sinorhizobium means "a Rhizobium isolated from China", in turn referring to the related genus Rhizobium ("root-associated life form").[18][9]

Proper name

The name Ensifer was published in 1982 and the name Sinorhizobium was published in 1988 thus the latter is regarded as a later synonym and by the rules of the Bacteriological Code (1990 Revision) of the International Committee on Systematics of Prokaryotes (ICSP), the older name (Ensifer) takes priority.[27] In response to a request that the single extant species of Ensifer (Ensifer adhaerens) be moved to Sinorhizobium, a special ICSP subcommittee was formed to evaluate the request. It was ultimately ruled that Ensifer retained priority and that all Sinorhizobium species be transferred to the genus Ensifer.[28][29] However, both terms continue to be used in published scientific literature, with Sinorhizobium being the more common.[30]

Deprecated species

Two species have been described which have since been reclassified into existing species: Sinorhizobium morelense (now Ensifer adhaerens)[27][31] and Sinorhizobium xinjiangense (now Ensifer fredii[32][33]—though some dissent exists[16][34]).

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN).[18][19] The following phylogeny is based on whole-genome analysis.[35]

Ensifer

Ensifer adhaerens

Ensifer arboris

Ensifer alkalisoli

Ensifer sojae

Ensifer saheli

Ensifer americanus

Ensifer glycinis

Ensifer shofinae

Ensifer fredii

outgroup

Pararhizobium

This phylogeny is based on a constrained analysis of the 16S ribosomal RNA.[35]

Ensifer

Ensifer glycinis

Ensifer shofinae

Ensifer saheli

Ensifer alkalisoli

Ensifer sojae

Ensifer americanus

Ensifer fredii

Ensifer kummerowiae

Ensifer xinjiangensis

Ensifer arboris

Ensifer psoraleae

Ensifer medicae

Ensifer numidicus

Ensifer meliloti

Ensifer kostiensis

Ensifer garamanticus

Ensifer terangae

Ensifer mexicanus

Ensifer morelensis

Ensifer sesbaniae

Ensifer adhaerens

outgroup

Pararhizobium

References

  1. ^ a b Ogasawara M, Suzuki T, Mutoh I, Annapurna K, Arora NK, Nishimura Y, Maheshwari DK (2003). "Sinorhizobium indiaense sp. nov. and Sinorhizobium abri sp. nov. isolated from tropical legumes, Sesbania rostrata and Abrus precatorius, respectively". Symbiosis. 34 (1): 53–68.
  2. ^ a b c d e Because no type strains have been submitted to international culture collections, these are not currently recognized as valid species.
  3. ^ a b Casida LE (1982). "Ensifer adhaerens gen. nov., sp. nov.: A bacterial predator of bacteria in soil". Int J Syst Bacteriol. 32 (3): 339–345. doi:10.1099/00207713-32-3-339.
  4. ^ Toledo I, Lloret L, Martínez-Romero E (March 2003). "Sinorhizobium americanus sp. nov., a new Sinorhizobium species nodulating native Acacia spp. in Mexico". Systematic and Applied Microbiology. 26 (1): 54–64. doi:10.1078/072320203322337317. PMID 12747410.
  5. ^ a b Nick G, de Lajudie P, Eardly BD, Suomalainen S, Paulin L, Zhang X, Gillis M, Lindström K (October 1999). "Sinorhizobium arboris sp. nov. and Sinorhizobium kostiense sp. nov., isolated from leguminous trees in Sudan and Kenya". International Journal of Systematic Bacteriology. 49 (Pt. 4): 1359–68. doi:10.1099/00207713-49-4-1359. PMID 10555313.
  6. ^ Le Quéré A, Tak N, Gehlot HS, Lavire C, Meyer T, Chapulliot D, Rathi S, Sakrouhi I, Rocha G, Rohmer M, Severac D (2017). "Genomic characterization of Ensifer aridi, a proposed new species of nitrogen-fixing rhizobium recovered from Asian, African and American deserts". BMC Genomics. 18 (1): 85. doi:10.1186/s12864-016-3447-y. PMC 5237526. PMID 28088165.
  7. ^ Rocha G, Le Quere A, Medina A, Cuellar A, Contreras JL, Carreno R, Bustillos R, Munoz-Rojas J, Villegas MD, Chaintreuil C, Dreyfus B, Munive JA (2020). "Diversity and phenotypic analyses of salt- and heat-tolerant wild bean Phaseolus filiformis rhizobia native of a sand beach in Baja California and description of Ensifer aridi sp. nov". Arch Microbiol. 202 (2): 309–322. doi:10.1007/s00203-019-01744-7. PMC 7012998. PMID 31659382.
  8. ^ Rincón-Rosales R, Lloret L, Ponce E, Martínez-Romero E (January 2009). "Rhizobia with different symbiotic efficiencies nodulate Acaciella angustissima in Mexico, including Sinorhizobium chiapanecum sp. nov. which has common symbiotic genes with Sinorhizobium mexicanum". FEMS Microbiology Ecology. 67 (1): 103–17. doi:10.1111/j.1574-6941.2008.00590.x. PMC 2784085. PMID 19120461.
  9. ^ a b Chen WX, Yan GH, Li JL (1988). "Numerical taxonomic study of fast-growing soybean rhizobia and a proposal that Rhizobium fredii be assigned to Sinorhizobium gen. nov". Int J Syst Bacteriol. 38 (4): 392–397. doi:10.1099/00207713-38-4-392. Archived from the original on 2013-05-03.
  10. ^ a b Yan H, Yan J, Sui XH, Wang ET, Chen WX, Zhang XX, Chen WF (April 2016). "Ensifer glycinis sp. nov., an novel rhizobial species associated with Glycine spp". International Journal of Systematic and Evolutionary Microbiology. 60 (Pt 3): 2910–6. doi:10.1099/ijsem.0.001120. PMID 27125987.
  11. ^ Merabet C, Martens M, Mahdhi M, Zakhia F, Sy A, Le Roux C, Domergue O, Coopman R, Bekki A, Mars M, Willems A, de Lajudie P (March 2010). "Multilocus sequence analysis of root nodule isolates from Lotus arabicus (Senegal), Lotus creticus, Argyrolobium uniflorum and Medicago sativa (Tunisia) and description of Ensifer numidicus sp. nov. and Ensifer garamanticus sp. nov". International Journal of Systematic and Evolutionary Microbiology. 60 (Pt 3): 664–74. doi:10.1099/ijs.0.012088-0. PMID 19656922.
  12. ^ Wei GH, Wang ET, Tan ZY, Zhu ME, Chen WX (November 2002). "Rhizobium indigoferae sp. nov. and Sinorhizobium kummerowiae sp. nov., respectively isolated from Indigofera spp. and Kummerowia stipulacea". International Journal of Systematic and Evolutionary Microbiology. 52 (Pt 6): 2231–9. doi:10.1099/00207713-52-6-2231. PMID 12508892.
  13. ^ Rome S, Fernandez MP, Brunel B, Normand P, Cleyet-Marel JC (October 1996). "Sinorhizobium medicae sp. nov., isolated from annual Medicago spp". International Journal of Systematic Bacteriology. 46 (4): 972–80. doi:10.1099/00207713-46-4-972. PMID 8863426.
  14. ^ a b c de Lajudie P, Willems A, Pot B, Dewettinck D, Maestrojuan G, Neyra M, Collins MD, Dreyfus B, Kersters K, Gillis M (1994). "Polyphasic taxonomy of rhizobia: Emendation of the genus Sinorhizobium and description of Sinorhizobium meliloti comb. nov., Sinorhizobium saheli sp. nov., and Sinorhizobium teranga sp. nov". Int J Syst Bacteriol. 44 (4): 715–733. doi:10.1099/00207713-44-4-715.
  15. ^ Lloret L, Ormeño-Orrillo E, Rincón R, Martínez-Romero J, Rogel-Hernández MA, Martínez-Romero E (June 2007). "Ensifer mexicanus sp. nov. a new species nodulating Acacia angustissima (Mill.) Kuntze in Mexico". Systematic and Applied Microbiology. 30 (4): 280–90. doi:10.1016/j.syapm.2006.12.002. PMID 17293074.
  16. ^ a b c Wang YC, Wang F, Hou BC, Wang ET, Chen WF, Sui XH, Chen WX, Li Y, Zhang YB (October 2013). "Proposal of Ensifer psoraleae sp. nov., Ensifer sesbaniae sp. nov., Ensifer morelense comb. nov. and Ensifer americanum comb. nov". Systematic and Applied Microbiology. 36 (7): 467–73. doi:10.1016/j.syapm.2013.05.001. PMID 23759600.
  17. ^ Li QQ, Wang ET, Chang YL, Zhang YZ, Zhang YM, Sui XH, Chen WF, Chen WX (August 2011). "Ensifer sojae sp. nov., isolated from root nodules of Glycine max grown in saline-alkaline soils". International Journal of Systematic and Evolutionary Microbiology. 61 (Pt 8): 1981–8. doi:10.1099/ijs.0.025049-0. PMID 20851917.
  18. ^ a b c Euzéby JP. "Sinorhizobium". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2012-05-02.
  19. ^ a b c Euzéby JP. "Ensifer". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2012-05-02.
  20. ^ Balkwill DL (2005). "Ensifer Casida 1982, 343VP". In Brenner DJ, Krieg NR, Garrity GM, Staley JT, Boone DR, De Vos P, Goodfellow M, Rainey FA, Schleifer KH (eds.). Bergey's Manual of Systematic Bacteriology, Volume Two: The Proteobacteria, Part C: The Alpha-, Beta-, Delta-, and Epsilonproteobacteria. New York, New York: Springer. pp. 354–361. doi:10.1007/0-387-29298-5_87. ISBN 978-0-387-24145-6.
  21. ^ Kuykendall LD, Hashem FM, Wang ET (2005). "Sinorhizobium Chen, Yan and Li 1988b, 396VP emend. de Lajudie, Willems, Pot, Dewettinck, Maestrojuan, Neyra, Collins, Dreyfus, Kersters and Gillis 1994, 732". In Brenner DJ, Krieg NR, Garrity GM, Staley JT, Boone DR, De Vos P, Goodfellow M, Rainey FA, Schleifer KH (eds.). Bergey's Manual of Systematic Bacteriology, Volume Two: The Proteobacteria, Part C: The Alpha-, Beta-, Delta-, and Epsilonproteobacteria. New York, New York: Springer. pp. 358–361. doi:10.1007/0-387-29298-5_88. ISBN 978-0-387-24145-6.
  22. ^ Galibert F, Finan TM, Long SR, Puhler A, Abola P, Ampe F, et al. (July 2001). "The composite genome of the legume symbiont Sinorhizobium meliloti". Science. 293 (5530): 668–72. doi:10.1126/science.1060966. PMID 11474104. S2CID 18580010.
  23. ^ "NCBI Genome Page for Sinorhizobium meliloti". National Center for Biotechnology Information (NCBI).
  24. ^ "NCBI Genome Page for Sinorhizobium medicae". National Center for Biotechnology Information (NCBI).
  25. ^ Schmeisser C, Liesegang H, Krysciak D, Bakkou N, Le Quéré A, Wollherr A, Heinemeyer I, Morgenstern B, Pommerening-Röser A, Flores M, Palacios R, Brenner S, Gottschalk G, Schmitz RA, Broughton WJ, Perret X, Strittmatter AW, Streit WR (June 2009). "Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems". Applied and Environmental Microbiology. 75 (12): 4035–45. Bibcode:2009ApEnM..75.4035S. doi:10.1128/AEM.00515-09. PMC 2698369. PMID 19376903.
  26. ^ "NCBI Genome Page for Sinorhizobium fredii". National Center for Biotechnology Information (NCBI).
  27. ^ a b Young JM (November 2003). "The genus name Ensifer Casida 1982 takes priority over Sinorhizobium Chen et al. 1988, and Sinorhizobium morelense Wang et al. 2002 is a later synonym of Ensifer adhaerens Casida 1982. Is the combination "Sinorhizobium adhaerens" (Casida 1982) Willems et al. 2003 legitimate? Request for an Opinion". International Journal of Systematic and Evolutionary Microbiology. 53 (Pt 6): 2107–10. doi:10.1099/ijs.0.02665-0. PMID 14657154.
  28. ^ Lindström K, Martínez-Romero ME (2002). "International Committee on Systematics of Prokaryotes Subcommittee on the taxonomy of Agrobacterium and Rhizobium. Minutes of the meeting, 4 July 2001, Hamilton, Canada". Int J Syst Bacteriol. 52 (6): 2337. doi:10.1099/ijs.0.02524-0.
  29. ^ Judicial Commission of the International Committee on Systematics of Prokaryotes (August 2008). "The genus name Sinorhizobium Chen et al. 1988 is a later synonym of Ensifer Casida 1982 and is not conserved over the latter genus name, and the species name 'Sinorhizobium adhaerens' is not validly published. Opinion 84". International Journal of Systematic and Evolutionary Microbiology. 58 (Pt 8): 1973. doi:10.1099/ijs.0.2008/005991-0. PMID 18676490.
  30. ^ Young JPW. (February 9, 2013). "Rhizobium: Writing about bacteria and their genomes". WordPress.
  31. ^ Wang ET, Tan ZY, Willems A, Fernández-López M, Reinhold-Hurek B, Martínez-Romero E (September 2002). "Sinorhizobium morelense sp. nov., a Leucaena leucocephala-associated bacterium that is highly resistant to multiple antibiotics". International Journal of Systematic and Evolutionary Microbiology. 52 (Pt 5): 1687–93. doi:10.1099/ijs.0.01954-0. hdl:10261/109835. PMID 12361275.
  32. ^ Peng GX, Tan ZY, Wang ET, Reinhold-Hurek B, Chen WF, Chen WX (March 2002). "Identification of isolates from soybean nodules in Xinjiang Region as Sinorhizobium xinjiangense and genetic differentiation of S. xinjiangense from Sinorhizobium fredii". International Journal of Systematic and Evolutionary Microbiology. 52 (Pt 2): 457–62. doi:10.1099/00207713-52-2-457. PMID 11931157.
  33. ^ Martens M, Dawyndt P, Coopman R, Gillis M, De Vos P, Willems A (January 2008). "Advantages of multilocus sequence analysis for taxonomic studies: A case study using 10 housekeeping genes in the genus Ensifer (including former Sinorhizobium)". International Journal of Systematic and Evolutionary Microbiology. 58 (Pt 1): 200–14. doi:10.1099/ijs.0.65392-0. PMID 18175710.
  34. ^ Martens M, Delaere M, Coopman R, De Vos P, Gillis M, Willems A (March 2007). "Multilocus sequence analysis of Ensifer and related taxa". International Journal of Systematic and Evolutionary Microbiology. 57 (Pt 3): 489–503. doi:10.1099/ijs.0.64344-0. PMID 17329774.
  35. ^ a b Hördt, Anton; López, Marina García; Meier-Kolthoff, Jan P.; Schleuning, Marcel; Weinhold, Lisa-Maria; Tindall, Brian J.; Gronow, Sabine; Kyrpides, Nikos C.; Woyke, Tanja; Göker, Markus (7 April 2020). "Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria". Frontiers in Microbiology. 11: 468. doi:10.3389/fmicb.2020.00468. PMC 7179689. PMID 32373076.
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visite a fonte
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wikipedia EN

Ensifer (bacterium): Brief Summary ( Inglês )

fornecido por wikipedia EN

Ensifer (often referred to in literature by its synonym Sinorhizobium) is a genus of nitrogen-fixing bacteria (rhizobia), three of which (Ensifer meliloti, Ensifer medicae and Ensifer fredii) have been sequenced.

licença
cc-by-sa-3.0
direitos autorais
Wikipedia authors and editors
original
visite a fonte
site do parceiro
wikipedia EN

中华根瘤菌属 ( Chinês )

fornecido por wikipedia 中文维基百科
模式種 费氏中华根瘤菌 Sinorhizobium fredii/附着剑菌 Ensifer adhaerens
物种[1][2][3]

见内文

中华根瘤菌属剑菌属学名Sinorhizobium/Ensifer)是根瘤菌目根瘤菌科下的一属。该属中草木樨中华根瘤菌Sinorhizobium meliloti[4][5]苜蓿中华根瘤菌Sinorhizobium medicae[6]进行过测序。

名称

该属曾先后于1982年与1988年被命名为剑菌属(Ensifer)与中华根瘤菌属(Sinorhizobium)。根据国际原核微生物系统学委员会(International Committee on Systematics of Prokaryotes,ISCP)的《细菌学法规》(Bacteriological Code)规定,发表时间更早的名称有优先命名权。[7]由于有人提议将当时剑菌属的唯一物种附着剑菌Ensifer adhaerens)并入中华根瘤菌属,为此ISCP设立了一个专门分委会对此进行评估。最终剑菌属保留其名称,并将所有中华根瘤菌属的物种并入剑菌属之中。[8][9]虽然如此,在大多学术著作中还是同时延用了这两个名称,而中华根瘤菌属一名则更为常见。

分类

参考文献

  1. ^ List of Prokaryotic names with Standing in Nomenclature—Genus Sinorhizobium 互联网档案馆存檔,存档日期2012-03-19.
  2. ^ List of Prokaryotic names with Standing in Nomenclature—Genus Ensifer 互联网档案馆存檔,存档日期2012-03-19.
  3. ^ Garrity, George M.; Brenner, Don J.; Krieg, Noel R.; Staley, James T. (eds.). Bergey's Manual of Systematic Bacteriology, Volume Two: The Proteobacteria, Part C: The Alpha-, Beta-, Delta-, and Epsilonproteobacteria. New York, New York: Springer. 2005: 354–361. ISBN 978-0-387-24145-6. 引文使用过时参数coauthors (帮助)
  4. ^ Galibert, F.; 等. The composite genome of the legume symbiont Sinorhizobium meliloti.. Science. 2001, 293 (5530): 668–672. PMID 11474104. doi:10.1126/science.1060966. 引文格式1维护:显式使用等标签 (link)
  5. ^ NCBI Genome Page for Sinorhizobium meliloti
  6. ^ NCBI Genome Page for Sinorhizobium medicae
  7. ^ Young, J. M. The genus name Ensifer Casida 1982 takes priority over Sinorhizobium Chen et al. 1988, and Sinorhizobium morelense Wang et al. 2002 is a later synonym of Ensifer adhaerens Casida 1982. Is the combination ‘Sinorhizobium adhaerens’ (Casida 1982) Willems et al. 2003 legitimate? Request for an Opinion. Int J Syst Bacteriol. 2003, 53 (6): 2107–2110 [2011-11-05]. doi:10.1099/ijs.0.02665-0. (原始内容存档于2009-02-11).
  8. ^ Lindström, K., and Martinez-Romero, M. E. International Committee on Systematics of Prokaryotes Subcommittee on the taxonomy of Agrobacterium and Rhizobium. Minutes of the meeting, 4 July 2001, Hamilton, Canada. (PDF). Int J Syst Bacteriol. 2002, 52 (6): 2337 [2011-11-05]. (原始内容 (PDF)存档于2007-09-29).
  9. ^ Judicial Commission of the International Committee on Systematics of Prokaryotes. The genus name Sinorhizobium Chen et al. 1988 is a later synonym of Ensifer Casida 1982 and is not conserved over the latter genus name, and the species name ‘Sinorhizobium adhaerens’ is not validly published. Opinion 84.. Int J Syst Bacteriol. 2008, 58 (Pt 8): 1973. PMID 18676490. doi:10.1099/ijs.0.2008/005991-0.[永久失效連結]
  10. ^ 10.0 10.1 Ogasawara, M., Suzuki, T., Mutoh, I., Annapurna, K., Arora, N. K., Nishimura, Y., and Maheshwari, D. K. Sinorhizobium indiaense sp. nov. and Sinorhizobium abri sp. nov. isolated from tropical legumes, Sesbania rostrata and Abrus precatorius, respectively. Symbiosis. 2003, 34 (1): 53–68.
  11. ^ 11.0 11.1 Because no type strains have been submitted to international culture collections, these are not currently recognized as valid species.
  12. ^ L. E. Casida, Jr. Ensifer adhaerens gen. nov., sp. nov.: A Bacterial Predator of Bacteria in Soil. Int J Syst Bacteriol. 1982, 32 (3): 339–345. doi:10.1099/00207713-32-3-339.[永久失效連結]
  13. ^ Toledo, I., Lloret, L., and Martínez-Romero, E. Sinorhizobium americanus sp. nov., a new Sinorhizobium species nodulating native Acacia spp. in Mexico. Syst Appl Microbiol. 2003, 26 (1): 54–64. PMID 12747410. doi:10.1078/072320203322337317.
  14. ^ 14.0 14.1 Nick, G., de Lajudie, P., Eardly, B. D., Suomalainen, S., Paulin, L., Zhang, X., Gillis, M., and Lindström, K. Sinorhizobium arboris sp. nov. and Sinorhizobium kostiense sp. nov., isolated from leguminous trees in Sudan and Kenya. Int J Syst Bacteriol. 1999, 49 (Pt. 4): 1359–1368. PMID 10555313. doi:10.1099/00207713-49-4-1359. (原始内容存档于2008-07-06).
  15. ^ Reiner Rincón-Rosales, Lourdes Lloret, Edith Ponce, and Esperanza Martínez-Romero. Rhizobia with different symbiotic efficiencies nodulate Acaciella angustissima in Mexico, including Sinorhizobium chiapanecum sp. nov. which has common symbiotic genes with Sinorhizobium mexicanum. Syst Appl Microbiol. 2009, 67 (1): 103–117. PMC 2784085. PMID 19120461. doi:10.1111/j.1574-6941.2008.00590.x.
  16. ^ Chen, W. X., Yan, G. H., and Li, J. L. Numerical taxonomic study of fast-growing soybean rhizobia and a proposal that Rhizobium fredii be assigned to Sinorhizobium gen. nov.. Int J Syst Bacteriol. 1988, 38 (4): 392–397. doi:10.1099/00207713-38-4-392.[永久失效連結]
  17. ^ 17.0 17.1 C. Merabet, M. Martens, M. Mahdhi, F. Zakhia, A. Sy, C. Le Roux, O. Domergue, R. Coopman, A. Bekki, M. Mars, A. Willems and P. de Lajudie. Multi Locus Sequence Analysis of root nodule isolates from Lotus arabicus (Senegal), Lotus creticus, Argyrolobium uniflorum and Medicago sativa (Tunisia) and description of Ensifer numidicus sp. nov. and Ensifer garamanticus sp. nov. (PDF). Int J Syst Evol Microbiol. 2009,. (Epub ahead of print) (Pt 3): 1–33. PMID 19656922. doi:10.1099/ijs.0.012088-0.[永久失效連結]
  18. ^ Wei, G. H., Wang, E. T., Tan, Z. Y., Zhu, M. E, and Chen, W. X. Rhizobium indigoferae sp. nov. and Sinorhizobium kummerowiae sp. nov., respectively isolated from Indigofera spp. and Kummerowia stipulacea. Int J Syst Evol Microbiol. 2002, 52 (Pt. 6): 2231–2239. PMID 12508892. doi:10.1099/ijs.0.02030-0. (原始内容存档于2007-02-10).
  19. ^ Rome, S., Fernandez, M. P., Brunel, B., Normand, P., Cleyet-Marel, J. C. Sinorhizobium medicae sp. nov., isolated from annual Medicago spp.. Int J Syst Bacteriol. 1996, 46 (4): 972–980. PMID 8863426. doi:10.1099/00207713-46-4-972. (原始内容存档于2008-09-06).
  20. ^ 20.0 20.1 20.2 Philippe de Lajudie, Anne Willems, Bruno Pot, Dirk Dewettinck, Gloria Maestrojuan, Marc Neyra, Matthew David Collins, Bernard Dreyfus, Karel Kersters, and Monique Gillis. Polyphasic Taxonomy of Rhizobia: Emendation of the Genus Sinorhizobium and Description of Sinorhizobium meliloti comb. nov., Sinorhizobium saheli sp. nov., and Sinorhizobium teranga sp. nov.. Int J Syst Bacteriol. 1994, 44 (4): 715–733 [2011-11-05]. doi:10.1099/00207713-44-4-715. (原始内容存档于2008-08-29).
  21. ^ Lloret, L., Ormeño-Orrillo, E., Rincón, R., Martínez-Romero, J., Rogel-Hernández, M. A., and Martínez-Romero, E. Ensifer mexicanus sp. nov. a new species nodulating Acacia angustissima (Mill.) Kuntze in Mexico. FEMS Microbiology Ecology. 2007, 30 (4): 280–290. PMID 17293074. doi:10.1016/j.syapm.2006.12.002.
  22. ^ Li, Q. Q, Tao Wang, E. T., Chang, Y. L., Zhang, Y. Z., Zhang, Y. M., Sui, X. H., Chen, W. F., and Chen, W. X. Ensifer (Sinorhizobium) sojae sp. nov., isolated from root nodules of Glycine max grown in saline-alkaline soils in Hebei province of China. Int J Syst Evol Microbiol. 2010, 49: 1359–1368. PMID 20851917. doi:10.1099/ijs.0.025049-0.[永久失效連結]
 title=
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维基百科作者和编辑
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visite a fonte
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wikipedia 中文维基百科

中华根瘤菌属: Brief Summary ( Chinês )

fornecido por wikipedia 中文维基百科

中华根瘤菌属或剑菌属(学名:Sinorhizobium/Ensifer)是根瘤菌目根瘤菌科下的一属。该属中草木樨中华根瘤菌(Sinorhizobium meliloti)与苜蓿中华根瘤菌(Sinorhizobium medicae)进行过测序。

licença
cc-by-sa-3.0
direitos autorais
维基百科作者和编辑
original
visite a fonte
site do parceiro
wikipedia 中文维基百科

シノリゾビウム属 ( Japonês )

fornecido por wikipedia 日本語
シノリゾビウム属 分類 ドメ
イン
: 真正細菌 Bacteria : プロテオバクテリア門
Proteobacteria : αプロテオバクテリア綱
Alpha Proteobacteria : リゾビウム目 Rhizobiales : リゾビウム科 Rhizobiaceae : シノリゾビウム属 Sinorhizobium 学名 Sinorhizobium
Chenら 1988 下位分類(種)
  • S.フレディ
  • S.メディカエ
  • S.メリロティ

シノリゾビウム属硝酸細菌の一種で、植物と共生する根粒菌に属するグラム陰性の非芽胞形成好気性桿菌。リゾビウム科に属し、基準種はシノリゾビウム・フレディ。属名は中国のリゾビウム属を意味するが、世界各地で発見されている。農作物の生育に重要な役割を果たしており、いくつかの種の遺伝子が解読されている。

中国のダイズの根粒から発見された成長の早い根粒菌がDNA-DNA分子交雑法により既に発見されていたリゾビウム属やブラディリゾビウム属と異なっていたため設けられた属である。タルウマゴヤシやアカシアなどと共生する種がある。通常は土壌や水中に生息し鞭毛で運動するが、種によって特異的にマメ科植物の根に侵入して感染する。感染された部位は膨大して根粒を形成する。根粒の中ではバクテロイドと呼ばれる巨大な細胞に成長し、空気中の空気を取り込んでニトロゲナーゼで窒素の固定化を行う。固定化された窒素は植物に供給され、植物からは糖を摂取するという共生関係を持つが、根粒が老化するとバクテロイドは自由生活型の細胞に戻る。

 title=
licença
cc-by-sa-3.0
direitos autorais
ウィキペディアの著者と編集者
original
visite a fonte
site do parceiro
wikipedia 日本語

シノリゾビウム属: Brief Summary ( Japonês )

fornecido por wikipedia 日本語

シノリゾビウム属は硝酸細菌の一種で、植物と共生する根粒菌に属するグラム陰性の非芽胞形成好気性桿菌。リゾビウム科に属し、基準種はシノリゾビウム・フレディ。属名は中国のリゾビウム属を意味するが、世界各地で発見されている。農作物の生育に重要な役割を果たしており、いくつかの種の遺伝子が解読されている。

中国のダイズの根粒から発見された成長の早い根粒菌がDNA-DNA分子交雑法により既に発見されていたリゾビウム属やブラディリゾビウム属と異なっていたため設けられた属である。タルウマゴヤシやアカシアなどと共生する種がある。通常は土壌や水中に生息し鞭毛で運動するが、種によって特異的にマメ科植物の根に侵入して感染する。感染された部位は膨大して根粒を形成する。根粒の中ではバクテロイドと呼ばれる巨大な細胞に成長し、空気中の空気を取り込んでニトロゲナーゼで窒素の固定化を行う。固定化された窒素は植物に供給され、植物からは糖を摂取するという共生関係を持つが、根粒が老化するとバクテロイドは自由生活型の細胞に戻る。

 title=https://ja.wikipedia.org/w/index.php?title=シノリゾビウム属&oldid=59678543」から取得 カテゴリ: プロテオバクテリア門
licença
cc-by-sa-3.0
direitos autorais
ウィキペディアの著者と編集者
original
visite a fonte
site do parceiro
wikipedia 日本語